IL_3J28_056

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

UGGC*GUCAUCA

Length

11 nucleotides

Bulged bases

3J28|1|N|C|1200, 3J28|1|N|A|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_056 not in the Motif Atlas

Geometric match to IL_3BNT_005

Geometric discrepancy: 0.3406

The information below is about IL_3BNT_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_64231.2

Basepair signature

cWW-cWW-cWW-L-cWW-R

Number of instances in this motif group

10

Unit IDs

3J28|1|N|U|1056
3J28|1|N|G|1057
3J28|1|N|G|1058
3J28|1|N|C|1059
*
3J28|1|N|G|1198
3J28|1|N|U|1199
3J28|1|N|C|1200
3J28|1|N|A|1201
3J28|1|N|U|1202
3J28|1|N|C|1203
3J28|1|N|A|1204

Current chains

Chain N

16S rRNA

Nearby chains