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Motif IL_64231.2 Version IL_64231.2 of this group appears in releases 3.89 to 3.91

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-82-93-74-75-6
1 IL_5J7L_3535J7L0.47090Multiple bulged bases with non-canonical cWWDA LSU rRNAC2870U2871A2872A2873C2874*G2843G2844U2845G2846cWWcwWcWW
2 IL_2O3V_0022O3V0.43300Decoding loop relatedB+ARNA (23-mer)A38A39A40A41G42*C7G8C9U10cWWcWWacWW
3 IL_4LFB_0084LFB0.00000A SSU rRNAC132U133A134C135C136*G227A228U229G230cWWcwWcWW
4 IL_5J7L_0105J7L0.10060Minor groove platform relatedAA SSU rRNAC132U133G134C135C136*G227A228U229G230cWWcwWcWW
5 IL_6CZR_1206CZR0.15760Minor groove platform related1a SSU rRNAC127U128A129C130C131*G223A224U225G226cWWncwWcWW
6 IL_3BNR_0083BNR0.31110Minor groove platform relatedD+CA site of human mitochondrial ribosome, chain threeG13C14A15A16G17*C7A8C9C10cWWncWwcWwcWW
7 IL_3BNT_0023BNT0.26960Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665*C6A7C8C9cWWncWBcWwcWW
8 IL_3BNT_0053BNT0.26960Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeG14C15A16A17G18*C6||||4_665A7||||4_665C8||||4_665C9||||4_665cWWncWBcWwcWW
9 IL_3LOA_0013LOA0.32730UAA/GAN variationB+ARNA (23-mer)G1497U1498A1499A1500C1501*G1401C1402C1403C1404cWWncWWcWW
10 IL_8VMA_0018VMA0.64880CEnterovirus 5' cloverleaf cis-acting replication elementC22C23C24A25C26*G16U17U18G19cWWcWWncWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAAG*CACC3
CUACC*GAUG2
CUAAC*GGUG1
AAAAG*CGCU1
CUGCC*GAUG1
GUAAC*GCCC1
CCCAC*GUUG1
Non-Watson-Crick part of the motif
SequenceCounts
CAA*AC3
UAC*AU2
UAA*GU1
AAA*GC1
UGC*AU1
UAA*CC1
CCA*UU1

Release history

Release3.893.903.91
Date2024-10-092024-11-062024-12-04
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform related (3)
  • Tandem non-canonical cWW pairs (2)
  • (2)
  • Decoding loop related (1)
  • UAA/GAN variation (1)
  • Multiple bulged bases with non-canonical cWW (1)
    • Basepair signature
    cWW-cWW-cWW-L-cWW-R
    Heat map statistics
    Min 0.00 | Avg 0.39 | Max 0.84
    Help

    Coloring options:

    IL_5J7L_353:IL_5J7L_353 = 0IL_5J7L_353:IL_2O3V_002 = 0.6034IL_5J7L_353:IL_4LFB_008 = 0.4709IL_5J7L_353:IL_5J7L_010 = 0.4785IL_5J7L_353:IL_6CZR_120 = 0.4801IL_5J7L_353:IL_3BNR_008 = 0.5822IL_5J7L_353:IL_3BNT_002 = 0.5727IL_5J7L_353:IL_3BNT_005 = 0.5727IL_5J7L_353:IL_3LOA_001 = 0.6537IL_5J7L_353:IL_8VMA_001 = 0.8383IL_2O3V_002:IL_5J7L_353 = 0.6034IL_2O3V_002:IL_2O3V_002 = 0IL_2O3V_002:IL_4LFB_008 = 0.433IL_2O3V_002:IL_5J7L_010 = 0.4696IL_2O3V_002:IL_6CZR_120 = 0.4724IL_2O3V_002:IL_3BNR_008 = 0.5224IL_2O3V_002:IL_3BNT_002 = 0.5054IL_2O3V_002:IL_3BNT_005 = 0.5054IL_2O3V_002:IL_3LOA_001 = 0.6061IL_2O3V_002:IL_8VMA_001 = 0.8247IL_4LFB_008:IL_5J7L_353 = 0.4709IL_4LFB_008:IL_2O3V_002 = 0.433IL_4LFB_008:IL_4LFB_008 = 0IL_4LFB_008:IL_5J7L_010 = 0.1006IL_4LFB_008:IL_6CZR_120 = 0.1576IL_4LFB_008:IL_3BNR_008 = 0.3111IL_4LFB_008:IL_3BNT_002 = 0.2696IL_4LFB_008:IL_3BNT_005 = 0.2696IL_4LFB_008:IL_3LOA_001 = 0.3273IL_4LFB_008:IL_8VMA_001 = 0.6488IL_5J7L_010:IL_5J7L_353 = 0.4785IL_5J7L_010:IL_2O3V_002 = 0.4696IL_5J7L_010:IL_4LFB_008 = 0.1006IL_5J7L_010:IL_5J7L_010 = 0IL_5J7L_010:IL_6CZR_120 = 0.1789IL_5J7L_010:IL_3BNR_008 = 0.3124IL_5J7L_010:IL_3BNT_002 = 0.2704IL_5J7L_010:IL_3BNT_005 = 0.2704IL_5J7L_010:IL_3LOA_001 = 0.3473IL_5J7L_010:IL_8VMA_001 = 0.6376IL_6CZR_120:IL_5J7L_353 = 0.4801IL_6CZR_120:IL_2O3V_002 = 0.4724IL_6CZR_120:IL_4LFB_008 = 0.1576IL_6CZR_120:IL_5J7L_010 = 0.1789IL_6CZR_120:IL_6CZR_120 = 0IL_6CZR_120:IL_3BNR_008 = 0.3237IL_6CZR_120:IL_3BNT_002 = 0.3114IL_6CZR_120:IL_3BNT_005 = 0.3114IL_6CZR_120:IL_3LOA_001 = 0.3788IL_6CZR_120:IL_8VMA_001 = 0.6475IL_3BNR_008:IL_5J7L_353 = 0.5822IL_3BNR_008:IL_2O3V_002 = 0.5224IL_3BNR_008:IL_4LFB_008 = 0.3111IL_3BNR_008:IL_5J7L_010 = 0.3124IL_3BNR_008:IL_6CZR_120 = 0.3237IL_3BNR_008:IL_3BNR_008 = 0IL_3BNR_008:IL_3BNT_002 = 0.1696IL_3BNR_008:IL_3BNT_005 = 0.1696IL_3BNR_008:IL_3LOA_001 = 0.3872IL_3BNR_008:IL_8VMA_001 = 0.6214IL_3BNT_002:IL_5J7L_353 = 0.5727IL_3BNT_002:IL_2O3V_002 = 0.5054IL_3BNT_002:IL_4LFB_008 = 0.2696IL_3BNT_002:IL_5J7L_010 = 0.2704IL_3BNT_002:IL_6CZR_120 = 0.3114IL_3BNT_002:IL_3BNR_008 = 0.1696IL_3BNT_002:IL_3BNT_002 = 0IL_3BNT_002:IL_3BNT_005 = 0.0001IL_3BNT_002:IL_3LOA_001 = 0.3085IL_3BNT_002:IL_8VMA_001 = 0.6314IL_3BNT_005:IL_5J7L_353 = 0.5727IL_3BNT_005:IL_2O3V_002 = 0.5054IL_3BNT_005:IL_4LFB_008 = 0.2696IL_3BNT_005:IL_5J7L_010 = 0.2704IL_3BNT_005:IL_6CZR_120 = 0.3114IL_3BNT_005:IL_3BNR_008 = 0.1696IL_3BNT_005:IL_3BNT_002 = 0.0001IL_3BNT_005:IL_3BNT_005 = 0IL_3BNT_005:IL_3LOA_001 = 0.3085IL_3BNT_005:IL_8VMA_001 = 0.6314IL_3LOA_001:IL_5J7L_353 = 0.6537IL_3LOA_001:IL_2O3V_002 = 0.6061IL_3LOA_001:IL_4LFB_008 = 0.3273IL_3LOA_001:IL_5J7L_010 = 0.3473IL_3LOA_001:IL_6CZR_120 = 0.3788IL_3LOA_001:IL_3BNR_008 = 0.3872IL_3LOA_001:IL_3BNT_002 = 0.3085IL_3LOA_001:IL_3BNT_005 = 0.3085IL_3LOA_001:IL_3LOA_001 = 0IL_3LOA_001:IL_8VMA_001 = 0.6449IL_8VMA_001:IL_5J7L_353 = 0.8383IL_8VMA_001:IL_2O3V_002 = 0.8247IL_8VMA_001:IL_4LFB_008 = 0.6488IL_8VMA_001:IL_5J7L_010 = 0.6376IL_8VMA_001:IL_6CZR_120 = 0.6475IL_8VMA_001:IL_3BNR_008 = 0.6214IL_8VMA_001:IL_3BNT_002 = 0.6314IL_8VMA_001:IL_3BNT_005 = 0.6314IL_8VMA_001:IL_3LOA_001 = 0.6449IL_8VMA_001:IL_8VMA_001 = 0IL_5J7L_353IL_2O3V_002IL_4LFB_008IL_5J7L_010IL_6CZR_120IL_3BNR_008IL_3BNT_002IL_3BNT_005IL_3LOA_001IL_8VMA_001Discrepancy0.000.200.400.600.80
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