3D structure

PDB id
3J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
12.9 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J28_075 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.2791
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

3J28|1|N|A|1430
3J28|1|N|A|1431
3J28|1|N|G|1432
3J28|1|N|A|1433
3J28|1|N|A|1434
3J28|1|N|G|1435
*
3J28|1|N|C|1466
3J28|1|N|C|1467
3J28|1|N|A|1468
3J28|1|N|C|1469
3J28|1|N|U|1470

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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