IL_3J28_075

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_075 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.2791

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3J28|1|N|A|1430
3J28|1|N|A|1431
3J28|1|N|G|1432
3J28|1|N|A|1433
3J28|1|N|A|1434
3J28|1|N|G|1435
*
3J28|1|N|C|1466
3J28|1|N|C|1467
3J28|1|N|A|1468
3J28|1|N|C|1469
3J28|1|N|U|1470

Current chains

Chain N

16S rRNA

Nearby chains