IL_3J28_079

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

3J28|1|N|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_079 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3931

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3J28|1|N|G|1405
3J28|1|N|U|1406
3J28|1|N|C|1407
3J28|1|N|A|1408
3J28|1|N|C|1409
*
3J28|1|N|G|1491
3J28|1|N|A|1492
3J28|1|N|A|1493
3J28|1|N|G|1494
3J28|1|N|U|1495
3J28|1|N|C|1496

Current chains

Chain N

16S rRNA

Nearby chains