3D structure

PDB id
3J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
12.9 Å

Loop

Sequence
GUGG*CACAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J28_089 not in the Motif Atlas
Geometric match to IL_5EW4_002
Geometric discrepancy: 0.3547
The information below is about IL_5EW4_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

3J28|1|N|G|951
3J28|1|N|U|952
3J28|1|N|G|953
3J28|1|N|G|954
*
3J28|1|N|C|1226
3J28|1|N|A|1227
3J28|1|N|C|1228
3J28|1|N|A|1229
3J28|1|N|C|1230

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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