IL_3J28_089
3D structure
- PDB id
- 3J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.9 Å
Loop
- Sequence
- GUGG*CACAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J28_089 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3547
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J28|1|N|G|951
3J28|1|N|U|952
3J28|1|N|G|953
3J28|1|N|G|954
*
3J28|1|N|C|1226
3J28|1|N|A|1227
3J28|1|N|C|1228
3J28|1|N|A|1229
3J28|1|N|C|1230
Current chains
- Chain N
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: