3D structure

PDB id
3J29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
3J29|1|N|A|1257, 3J29|1|N|A|1280, 3J29|1|N|C|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J29_064 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.336
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

3J29|1|N|G|1255
3J29|1|N|A|1256
3J29|1|N|A|1257
3J29|1|N|G|1258
*
3J29|1|N|C|1277
3J29|1|N|G|1278
3J29|1|N|G|1279
3J29|1|N|A|1280
3J29|1|N|C|1281
3J29|1|N|C|1282

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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