IL_3J2A_002

3D structure

PDB id

3J2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CAG*CAUG

Length

7 nucleotides

Bulged bases

3J2A|1|N|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2A_002 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.2657

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J2A|1|N|C|43
3J2A|1|N|A|44
3J2A|1|N|G|45
*
3J2A|1|N|C|396
3J2A|1|N|A|397
3J2A|1|N|U|398
3J2A|1|N|G|399

Current chains

Chain N

16S rRNA

Nearby chains