IL_3J2B_065

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

3J2B|1|N|A|1257, 3J2B|1|N|A|1280, 3J2B|1|N|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_065 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.3284

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3J2B|1|N|G|1255
3J2B|1|N|A|1256
3J2B|1|N|A|1257
3J2B|1|N|G|1258
*
3J2B|1|N|C|1277
3J2B|1|N|G|1278
3J2B|1|N|G|1279
3J2B|1|N|A|1280
3J2B|1|N|C|1281
3J2B|1|N|C|1282

Current chains

Chain N

16S rRNA

Nearby chains