IL_3J2C_077

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUGG*CACAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_077 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3381

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

3J2C|1|M|G|951
3J2C|1|M|U|952
3J2C|1|M|G|953
3J2C|1|M|G|954
*
3J2C|1|M|C|1226
3J2C|1|M|A|1227
3J2C|1|M|C|1228
3J2C|1|M|A|1229
3J2C|1|M|C|1230

Current chains

Chain M

16S rRNA head domain

Nearby chains