IL_3J2C_092

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UGCAUGG*UCAUCAUG

Length

15 nucleotides

Bulged bases

3J2C|1|M|C|1054, 3J2C|1|M|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_092 not in the Motif Atlas

Geometric match to IL_8P9A_439

Geometric discrepancy: 0.3334

The information below is about IL_8P9A_439

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86012.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

1

Unit IDs

3J2C|1|M|U|1052
3J2C|1|M|G|1053
3J2C|1|M|C|1054
3J2C|1|M|A|1055
3J2C|1|M|U|1056
3J2C|1|M|G|1057
3J2C|1|M|G|1058
*
3J2C|1|M|U|1199
3J2C|1|M|C|1200
3J2C|1|M|A|1201
3J2C|1|M|U|1202
3J2C|1|M|C|1203
3J2C|1|M|A|1204
3J2C|1|M|U|1205
3J2C|1|M|G|1206

Current chains

Chain M

16S rRNA head domain

Nearby chains