IL_3J2D_047

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_047 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.5408

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

3J2D|1|N|G|887
3J2D|1|N|G|888
3J2D|1|N|A|889
3J2D|1|N|G|890
3J2D|1|N|U|891
3J2D|1|N|A|892
3J2D|1|N|C|893
3J2D|1|N|G|894
*
3J2D|1|N|U|905
3J2D|1|N|A|906
3J2D|1|N|A|907
3J2D|1|N|A|908
3J2D|1|N|A|909
3J2D|1|N|C|910

Current chains

Chain N

16S rRNA

Nearby chains