IL_3J5S_008

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5S_008 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.4457

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

3J5S|1|A|A|2108
3J5S|1|A|U|2109
3J5S|1|A|G|2110
*
3J5S|1|A|C|2179
3J5S|1|A|U|2180
3J5S|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Energy-dependent translational throttle A (EttA)

Chain F

50S ribosomal protein L1