IL_3J6X_019
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|1S|U|313, 3J6X|1|1S|C|351
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_019 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.2023
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
3J6X|1|1S|U|311
3J6X|1|1S|A|312
3J6X|1|1S|U|313
3J6X|1|1S|C|314
3J6X|1|1S|A|315
3J6X|1|1S|A|316
*
3J6X|1|1S|U|348
3J6X|1|1S|U|349
3J6X|1|1S|U|350
3J6X|1|1S|C|351
3J6X|1|1S|A|352
3J6X|1|1S|A|353
3J6X|1|1S|C|354
3J6X|1|1S|G|355
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 23
- 40S ribosomal protein S23
- Chain S8
- 40S ribosomal protein S8
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