IL_3J6X_032
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 3J6X|1|1S|A|579
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_032 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.249
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|G|562
3J6X|1|1S|U|563
3J6X|1|1S|G|564
3J6X|1|1S|C|565
3J6X|1|1S|C|566
3J6X|1|1S|A|567
3J6X|1|1S|G|568
*
3J6X|1|1S|C|575
3J6X|1|1S|G|576
3J6X|1|1S|G|577
3J6X|1|1S|U|578
3J6X|1|1S|A|579
3J6X|1|1S|A|580
3J6X|1|1S|U|581
3J6X|1|1S|U|582
3J6X|1|1S|C|583
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 30
- 40S ribosomal protein S30
- Chain IR
- TSV IRES mRNA
- Chain S3
- 40S ribosomal protein S3
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