IL_3J6X_043

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_043 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.2081

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J6X|1|1S|G|871
3J6X|1|1S|G|872
3J6X|1|1S|U|873
3J6X|1|1S|C|874
*
3J6X|1|1S|G|953
3J6X|1|1S|G|954
3J6X|1|1S|A|955
3J6X|1|1S|C|956

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 27

40S ribosomal protein S27

Chain S1

40S ribosomal protein S1