IL_3J6X_045
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_045 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.179
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3J6X|1|1S|G|885
3J6X|1|1S|U|886
3J6X|1|1S|A|887
3J6X|1|1S|U|888
*
3J6X|1|1S|A|924
3J6X|1|1S|G|925
3J6X|1|1S|A|926
3J6X|1|1S|C|927
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain 26
- 40S ribosomal protein S26
- Chain L2
- 60S ribosomal protein L2
- Chain S1
- 40S ribosomal protein S1
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