IL_3J6X_132
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_132 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.2414
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
3J6X|1|2S|U|1167
3J6X|1|2S|U|1168
3J6X|1|2S|A|1169
3J6X|1|2S|A|1170
3J6X|1|2S|G|1171
*
3J6X|1|2S|C|1328
3J6X|1|2S|U|1329
3J6X|1|2S|A|1330
3J6X|1|2S|U|1331
3J6X|1|2S|A|1332
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 72
- 60S ribosomal protein L32
- Chain 73
- 60S ribosomal protein L33
- Chain L7
- 60S ribosomal protein L7
Coloring options: