IL_3J6X_156
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1716, 3J6X|1|2S|A|1729
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_156 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1946
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6X|1|2S|C|1711
3J6X|1|2S|G|1712
3J6X|1|2S|G|1713
3J6X|1|2S|A|1714
3J6X|1|2S|A|1715
3J6X|1|2S|U|1716
3J6X|1|2S|U|1717
*
3J6X|1|2S|G|1727
3J6X|1|2S|G|1728
3J6X|1|2S|A|1729
3J6X|1|2S|G|1730
3J6X|1|2S|A|1731
3J6X|1|2S|U|1732
3J6X|1|2S|G|1733
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 13
- 40S ribosomal protein S13
- Chain 59
- 60S ribosomal protein L19
- Chain 67
- 60S ribosomal protein L27
- Chain 70
- 60S ribosomal protein L30
- Chain 74
- 60S ribosomal protein L34
- Chain 83
- 60S ribosomal protein L43
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