IL_3J6X_195
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 3J6X|1|2S|A|3142, 3J6X|1|2S|C|3143
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_195 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.1672
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J6X|1|2S|C|3004
3J6X|1|2S|A|3005
3J6X|1|2S|A|3006
3J6X|1|2S|U|3007
*
3J6X|1|2S|A|3139
3J6X|1|2S|G|3140
3J6X|1|2S|A|3141
3J6X|1|2S|A|3142
3J6X|1|2S|C|3143
3J6X|1|2S|G|3144
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain L3
- 60S ribosomal protein L3
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