IL_3J6X_255

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

3J6X|1|2S|U|3259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_255 not in the Motif Atlas

Homologous match to IL_8P9A_353

Geometric discrepancy: 0.2621

The information below is about IL_8P9A_353

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62925.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3J6X|1|2S|C|3225
3J6X|1|2S|A|3226
3J6X|1|2S|A|3227
3J6X|1|2S|C|3228
3J6X|1|2S|G|3229
*
3J6X|1|2S|U|3258
3J6X|1|2S|U|3259
3J6X|1|2S|G|3260

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 54

60S ribosomal protein L14

Chain 73

60S ribosomal protein L33

Chain L6

60S ribosomal protein L6