IL_3J6Y_009

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

3J6Y|1|1S|C|114, 3J6Y|1|1S|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_009 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1945

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J6Y|1|1S|U|113
3J6Y|1|1S|C|114
3J6Y|1|1S|G|115
3J6Y|1|1S|U|116
*
3J6Y|1|1S|A|300
3J6Y|1|1S|A|301

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8