IL_3J6Y_045
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 3J6Y|1|1S|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_045 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.283
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3J6Y|1|1S|C|874
3J6Y|1|1S|G|875
3J6Y|1|1S|G|876
3J6Y|1|1S|G|877
3J6Y|1|1S|G|878
*
3J6Y|1|1S|C|950
3J6Y|1|1S|A|951
3J6Y|1|1S|A|952
3J6Y|1|1S|G|953
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 13
- 40S ribosomal protein S13
- Chain 26
- 40S ribosomal protein S26
- Chain 70
- 60S ribosomal protein L30
- Chain S1
- 40S ribosomal protein S1
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