IL_3J6Y_107
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|534, 3J6Y|1|2S|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_107 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1584
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|G|531
3J6Y|1|2S|A|532
3J6Y|1|2S|A|533
3J6Y|1|2S|U|534
3J6Y|1|2S|G|535
3J6Y|1|2S|U|536
3J6Y|1|2S|A|537
3J6Y|1|2S|G|538
*
3J6Y|1|2S|U|553
3J6Y|1|2S|A|554
3J6Y|1|2S|U|555
3J6Y|1|2S|U|556
3J6Y|1|2S|A|557
3J6Y|1|2S|U|558
3J6Y|1|2S|A|559
3J6Y|1|2S|G|560
3J6Y|1|2S|C|561
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 54
- 60S ribosomal protein L14
- Chain 60
- 60S ribosomal protein L20
Coloring options: