IL_3J6Y_137
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|1191, 3J6Y|1|2S|C|1192, 3J6Y|1|2S|C|1316, 3J6Y|1|2S|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_137 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1806
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|C|1187
3J6Y|1|2S|U|1188
3J6Y|1|2S|C|1189
3J6Y|1|2S|A|1190
3J6Y|1|2S|U|1191
3J6Y|1|2S|C|1192
3J6Y|1|2S|A|1193
3J6Y|1|2S|G|1194
*
3J6Y|1|2S|C|1314
3J6Y|1|2S|U|1315
3J6Y|1|2S|C|1316
3J6Y|1|2S|A|1317
3J6Y|1|2S|A|1318
3J6Y|1|2S|G|1319
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 54
- 60S ribosomal protein L14
- Chain 56
- 60S ribosomal protein L16
- Chain 60
- 60S ribosomal protein L20
- Chain 80
- 60S ribosomal protein L40
- Chain L9
- 60S ribosomal protein L9
Coloring options: