3D structure

PDB id
3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.1 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
3J6Y|1|2S|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J6Y_140 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.3647
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

3J6Y|1|2S|U|1218
3J6Y|1|2S|C|1219
3J6Y|1|2S|U|1220
3J6Y|1|2S|A|1221
3J6Y|1|2S|G|1222
3J6Y|1|2S|A|1223
3J6Y|1|2S|C|1224
3J6Y|1|2S|A|1225
3J6Y|1|2S|G|1226
*
3J6Y|1|2S|C|1283
3J6Y|1|2S|C|1284
3J6Y|1|2S|G|1285
3J6Y|1|2S|A|1286
3J6Y|1|2S|A|1287

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 60
60S ribosomal protein L20
Chain 80
60S ribosomal protein L40
Chain L9
60S ribosomal protein L9

Coloring options:


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