IL_3J6Y_152
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|1820, 3J6Y|1|2S|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_152 not in the Motif Atlas
- Homologous match to IL_8C3A_071
- Geometric discrepancy: 0.2759
- The information below is about IL_8C3A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43275.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
3J6Y|1|2S|G|1623
3J6Y|1|2S|G|1624
3J6Y|1|2S|A|1625
*
3J6Y|1|2S|U|1818
3J6Y|1|2S|U|1819
3J6Y|1|2S|U|1820
3J6Y|1|2S|U|1821
3J6Y|1|2S|C|1822
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 74
- 60S ribosomal protein L34
- Chain 78
- 60S ribosomal protein L38
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