IL_3J6Y_154

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_154 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1822

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3J6Y|1|2S|U|1645
3J6Y|1|2S|G|1646
3J6Y|1|2S|A|1647
3J6Y|1|2S|A|1648
3J6Y|1|2S|U|1649
*
3J6Y|1|2S|A|1806
3J6Y|1|2S|G|1807
3J6Y|1|2S|G|1808
3J6Y|1|2S|A|1809
3J6Y|1|2S|A|1810

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L27

Chain 74

60S ribosomal protein L34

Chain L2

60S ribosomal protein L2