IL_3J6Y_161
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_161 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1662
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|2S|A|1883
3J6Y|1|2S|A|1884
3J6Y|1|2S|U|1885
3J6Y|1|2S|A|1886
3J6Y|1|2S|A|1887
3J6Y|1|2S|U|1888
3J6Y|1|2S|G|1889
*
3J6Y|1|2S|C|2346
3J6Y|1|2S|U|2347
3J6Y|1|2S|A|2348
3J6Y|1|2S|U|2349
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 71
- 60S ribosomal protein L31
- Chain L3
- 60S ribosomal protein L3
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