IL_3J6Y_173

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3J6Y|1|2S|A|2242, 3J6Y|1|2S|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_173 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1581

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J6Y|1|2S|U|2200
3J6Y|1|2S|G|2201
*
3J6Y|1|2S|U|2241
3J6Y|1|2S|A|2242
3J6Y|1|2S|A|2243
3J6Y|1|2S|A|2244

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2