IL_3J6Y_203

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

3J6Y|1|2S|U|3056, 3J6Y|1|2S|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_203 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2009

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

3J6Y|1|2S|U|3054
3J6Y|1|2S|U|3055
3J6Y|1|2S|U|3056
3J6Y|1|2S|U|3057
3J6Y|1|2S|U|3058
3J6Y|1|2S|G|3059
*
3J6Y|1|2S|C|3084
3J6Y|1|2S|G|3085
3J6Y|1|2S|A|3086
3J6Y|1|2S|A|3087
3J6Y|1|2S|G|3088

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 64

60S ribosomal protein L24

Chain 71

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3