IL_3J6Y_206

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_206 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3688

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J6Y|1|2S|A|3163
3J6Y|1|2S|C|3164
3J6Y|1|2S|A|3165
3J6Y|1|2S|C|3166
*
3J6Y|1|2S|G|3284
3J6Y|1|2S|C|3285
3J6Y|1|2S|G|3286
3J6Y|1|2S|U|3287

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains