IL_3J73_167
3D structure
- PDB id
- 3J73 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 3J73|1|S2|C|1331, 3J73|1|S2|U|1494, 3J73|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J73_167 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.205
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J73|1|S2|U|1329
3J73|1|S2|G|1330
3J73|1|S2|C|1331
3J73|1|S2|A|1332
3J73|1|S2|U|1333
3J73|1|S2|G|1334
3J73|1|S2|G|1335
*
3J73|1|S2|U|1492
3J73|1|S2|C|1493
3J73|1|S2|U|1494
3J73|1|S2|G|1495
3J73|1|S2|U|1496
3J73|1|S2|G|1497
3J73|1|S2|A|1498
3J73|1|S2|U|1499
3J73|1|S2|G|1500
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S4
- Messenger RNA
- Chain S5
- A/P tRNA
- Chain SD
- Ribosomal protein uS3
- Chain SK
- Ribosomal protein eS10
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
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