IL_3J77_034
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_034 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.2003
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J77|1|1S|C|627
3J77|1|1S|G|628
3J77|1|1S|U|629
3J77|1|1S|A|630
3J77|1|1S|G|631
*
3J77|1|1S|U|968
3J77|1|1S|C|969
3J77|1|1S|A|970
3J77|1|1S|A|971
3J77|1|1S|G|972
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 13
- 40S ribosomal protein S13
- Chain 23
- 40S ribosomal protein S23
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
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