IL_3J77_044

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

3J77|1|1S|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_044 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.2353

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J77|1|1S|C|874
3J77|1|1S|G|875
3J77|1|1S|G|876
3J77|1|1S|G|877
3J77|1|1S|G|878
*
3J77|1|1S|C|950
3J77|1|1S|A|951
3J77|1|1S|A|952
3J77|1|1S|G|953

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 26

40S ribosomal protein S26

Chain 80

60S ribosomal protein L30

Chain S1

40S ribosomal protein S1