IL_3J77_093
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_093 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1573
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|C|82
3J77|1|2S|U|83
3J77|1|2S|U|84
3J77|1|2S|A|85
3J77|1|2S|G|86
3J77|1|2S|U|87
3J77|1|2S|A|88
3J77|1|2S|A|89
*
3J77|1|2S|U|97
3J77|1|2S|G|98
3J77|1|2S|A|99
3J77|1|2S|A|100
3J77|1|2S|G|101
3J77|1|2S|C|102
3J77|1|2S|G|103
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 68
- 60S ribosomal protein L18
- Chain 78
- 60S ribosomal protein L28
- Chain L4
- 60S ribosomal protein L4
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