IL_3J77_206

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

3J77|1|2S|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_206 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1525

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3J77|1|2S|U|3047
3J77|1|2S|A|3048
3J77|1|2S|A|3049
3J77|1|2S|U|3050
3J77|1|2S|U|3051
*
3J77|1|2S|A|3091
3J77|1|2S|C|3092
3J77|1|2S|C|3093
3J77|1|2S|A|3094

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L23

Chain 74

60S ribosomal protein L24

Chain L3

60S ribosomal protein L3