IL_3J77_221

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

3J77|1|2S|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_221 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2275

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3J77|1|2S|G|3328
3J77|1|2S|U|3329
3J77|1|2S|A|3330
*
3J77|1|2S|U|3373
3J77|1|2S|U|3374
3J77|1|2S|A|3375
3J77|1|2S|A|3376
3J77|1|2S|G|3377
3J77|1|2S|C|3378

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 74

60S ribosomal protein L24

Chain 81

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3