IL_3J77_258

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

3J77|1|2S|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_258 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.3392

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3J77|1|2S|G|1623
3J77|1|2S|G|1624
3J77|1|2S|A|1625
*
3J77|1|2S|U|1818
3J77|1|2S|U|1819
3J77|1|2S|U|1820
3J77|1|2S|U|1821
3J77|1|2S|C|1822

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 84

60S ribosomal protein L34

Chain 88

60S ribosomal protein L38