3D structure

PDB id
3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.3 Å

Loop

Sequence
GGUC*GGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J78_044 not in the Motif Atlas
Geometric match to IL_4V88_430
Geometric discrepancy: 0.2148
The information below is about IL_4V88_430
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

3J78|1|1S|G|871
3J78|1|1S|G|872
3J78|1|1S|U|873
3J78|1|1S|C|874
*
3J78|1|1S|G|953
3J78|1|1S|G|954
3J78|1|1S|A|955
3J78|1|1S|C|956

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 13
40S ribosomal protein S13
Chain 27
40S ribosomal protein S27
Chain S1
40S ribosomal protein S1

Coloring options:


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