IL_3J78_049
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_049 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.2096
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J78|1|1S|C|990
3J78|1|1S|G|991
3J78|1|1S|A|992
3J78|1|1S|A|993
3J78|1|1S|G|994
*
3J78|1|1S|C|1010
3J78|1|1S|G|1011
3J78|1|1S|U|1012
3J78|1|1S|A|1013
3J78|1|1S|G|1014
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain 26
- 40S ribosomal protein S26
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L2
- 60S ribosomal protein L2
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