IL_3J78_115
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 3J78|1|2S|A|933, 3J78|1|2S|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_115 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.2291
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J78|1|2S|G|805
3J78|1|2S|A|806
3J78|1|2S|A|807
3J78|1|2S|A|808
3J78|1|2S|G|809
*
3J78|1|2S|C|931
3J78|1|2S|U|932
3J78|1|2S|A|933
3J78|1|2S|G|934
3J78|1|2S|U|935
3J78|1|2S|A|936
3J78|1|2S|G|937
3J78|1|2S|C|938
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 78
- 60S ribosomal protein L28
- Chain 87
- 60S ribosomal protein L37
- Chain L4
- 60S ribosomal protein L4
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