IL_3J78_120
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 3J78|1|2S|G|908, 3J78|1|2S|A|920, 3J78|1|2S|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_120 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.2009
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J78|1|2S|G|907
3J78|1|2S|G|908
3J78|1|2S|G|909
*
3J78|1|2S|U|919
3J78|1|2S|A|920
3J78|1|2S|A|921
3J78|1|2S|U|922
3J78|1|2S|C|923
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L15
- Chain 67
- 60S ribosomal protein L17
- Chain 87
- 60S ribosomal protein L37
- Chain L2
- 60S ribosomal protein L2
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