IL_3J78_125
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_125 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.1666
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J78|1|2S|G|991
3J78|1|2S|A|992
3J78|1|2S|G|993
3J78|1|2S|G|994
3J78|1|2S|U|995
3J78|1|2S|A|996
3J78|1|2S|A|997
*
3J78|1|2S|U|1052
3J78|1|2S|A|1053
3J78|1|2S|A|1054
3J78|1|2S|A|1055
3J78|1|2S|U|1056
3J78|1|2S|A|1057
3J78|1|2S|U|1058
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 60
- 60S ribosomal protein L10
- Chain 71
- 60S ribosomal protein L21
- Chain L7
- 60S ribosomal protein L7
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