IL_3J78_137
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 3J78|1|2S|U|1191, 3J78|1|2S|C|1192, 3J78|1|2S|C|1316, 3J78|1|2S|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_137 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2105
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|2S|C|1187
3J78|1|2S|U|1188
3J78|1|2S|C|1189
3J78|1|2S|A|1190
3J78|1|2S|U|1191
3J78|1|2S|C|1192
3J78|1|2S|A|1193
3J78|1|2S|G|1194
*
3J78|1|2S|C|1314
3J78|1|2S|U|1315
3J78|1|2S|C|1316
3J78|1|2S|A|1317
3J78|1|2S|A|1318
3J78|1|2S|G|1319
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L14
- Chain 66
- 60S ribosomal protein L16
- Chain 70
- 60S ribosomal protein L20
- Chain 90
- 60S ribosomal protein L40
- Chain L9
- 60S ribosomal protein L9
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