IL_3J78_140
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 3J78|1|2S|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_140 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.3456
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
3J78|1|2S|U|1218
3J78|1|2S|C|1219
3J78|1|2S|U|1220
3J78|1|2S|A|1221
3J78|1|2S|G|1222
3J78|1|2S|A|1223
3J78|1|2S|C|1224
3J78|1|2S|A|1225
3J78|1|2S|G|1226
*
3J78|1|2S|C|1283
3J78|1|2S|C|1284
3J78|1|2S|G|1285
3J78|1|2S|A|1286
3J78|1|2S|A|1287
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 70
- 60S ribosomal protein L20
- Chain 90
- 60S ribosomal protein L40
- Chain L9
- 60S ribosomal protein L9
- Chain P0
- 60S acidic ribosomal protein P0
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