IL_3J78_152
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGAU*GUUUUC
- Length
- 10 nucleotides
- Bulged bases
- 3J78|1|2S|U|1820, 3J78|1|2S|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_152 not in the Motif Atlas
- Homologous match to IL_5TBW_065
- Geometric discrepancy: 0.3331
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J78|1|2S|G|1623
3J78|1|2S|G|1624
3J78|1|2S|A|1625
3J78|1|2S|U|1626
*
3J78|1|2S|G|1817
3J78|1|2S|U|1818
3J78|1|2S|U|1819
3J78|1|2S|U|1820
3J78|1|2S|U|1821
3J78|1|2S|C|1822
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 77
- 60S ribosomal protein L27
- Chain 84
- 60S ribosomal protein L34
- Chain 88
- 60S ribosomal protein L38
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