IL_3J78_196

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

3J78|1|2S|A|3142, 3J78|1|2S|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_196 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2205

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J78|1|2S|C|3004
3J78|1|2S|A|3005
3J78|1|2S|A|3006
3J78|1|2S|U|3007
*
3J78|1|2S|A|3139
3J78|1|2S|G|3140
3J78|1|2S|A|3141
3J78|1|2S|A|3142
3J78|1|2S|C|3143
3J78|1|2S|G|3144

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain L3

60S ribosomal protein L3