IL_3J78_198
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_198 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.1504
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J78|1|2S|C|3018
3J78|1|2S|U|3019
3J78|1|2S|U|3020
3J78|1|2S|A|3021
3J78|1|2S|G|3022
3J78|1|2S|U|3023
3J78|1|2S|A|3024
3J78|1|2S|C|3025
*
3J78|1|2S|G|3030
3J78|1|2S|G|3031
3J78|1|2S|A|3032
3J78|1|2S|A|3033
3J78|1|2S|C|3034
3J78|1|2S|A|3035
3J78|1|2S|G|3036
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 73
- 60S ribosomal protein L23
- Chain 90
- 60S ribosomal protein L40
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9
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