IL_3J78_200

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

3J78|1|2S|U|3056, 3J78|1|2S|U|3058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_200 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1697

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

3J78|1|2S|U|3054
3J78|1|2S|U|3055
3J78|1|2S|U|3056
3J78|1|2S|U|3057
3J78|1|2S|U|3058
3J78|1|2S|G|3059
*
3J78|1|2S|C|3084
3J78|1|2S|G|3085
3J78|1|2S|A|3086
3J78|1|2S|A|3087
3J78|1|2S|G|3088

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 74

60S ribosomal protein L24

Chain 81

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3