IL_3J78_250

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

3J78|1|2S|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_250 not in the Motif Atlas

Homologous match to IL_8P9A_353

Geometric discrepancy: 0.264

The information below is about IL_8P9A_353

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82741.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

3J78|1|2S|C|3225
3J78|1|2S|A|3226
3J78|1|2S|A|3227
3J78|1|2S|C|3228
3J78|1|2S|G|3229
*
3J78|1|2S|U|3258
3J78|1|2S|U|3259
3J78|1|2S|G|3260

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 64

60S ribosomal protein L14

Chain 66

60S ribosomal protein L16

Chain L6

60S ribosomal protein L6